Inner Oslofjorden Phytoplankton Database

Latest version published by UiO Department of Biosciences on Jun 28, 2021 UiO Department of Biosciences

The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).

The source file for this dataset is available on Zenodo: https://doi.org/10.5281/zenodo.5031409

Data Records

The data in this sampling event resource has been published as a Darwin Core Archive (DwC-A), which is a standardized format for sharing biodiversity data as a set of one or more data tables. The core data table contains 724 records. 2 extension data tables also exist. An extension record supplies extra information about a core record. The number of records in each extension data table is illustrated below.

  • Event (core)
    724
  • Occurrence 
    23647
  • MeasurementOrFact 
    3850

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Downloads

Download the latest version of this resource data as a Darwin Core Archive (DwC-A) or the resource metadata as EML or RTF:

Data as a DwC-A file download 724 records in English (2 MB) - Update frequency: unknown
Metadata as an EML file download in English (14 KB)
Metadata as an RTF file download in English (11 KB)

Versions

The table below shows only published versions of the resource that are publicly accessible.

How to cite

Researchers should cite this work as follows:

Lundsør E (2021): Inner Oslofjorden Phytoplankton Database. v1.8. UiO Department of Biosciences. Dataset/Samplingevent. https://ipt.gbif.no/resource?r=oslofjord_phytoplankton&v=1.8

Rights

Researchers should respect the following rights statement:

The publisher and rights holder of this work is UiO Department of Biosciences. This work is licensed under a Creative Commons Attribution (CC-BY) 4.0 License.

GBIF Registration

This resource has been registered with GBIF, and assigned the following GBIF UUID: 777ea835-48a3-4136-bf3a-32c5b897563f.  UiO Department of Biosciences publishes this resource, and is itself registered in GBIF as a data publisher endorsed by GBIF Norway.

Keywords

Samplingevent; time series; phytoplankton; environmental data

External data

The resource data is also available in other formats

Source datasethttps://doi.org/10.5281/zenodo.5031409 UTF-8 Microsoft Excel

Contacts

Who created the resource:

Elisabeth Lundsør
PhD candidate
University of Oslo NO

Who can answer questions about the resource:

Elisabeth Lundsør
Wenche Eikrem
Researcher
Norwegian Institute for Water Research NO

Who filled in the metadata:

Elisabeth Lundsør

Who else was associated with the resource:

User
Vidar Bakken
Content Provider
University of Oslo
Research institution
University of Oslo P.O. Box 1072 Blindern 0316 Oslo NO
https://www.uio.no/
Content Provider
Fagrådet for vann- og Avløpsteknisk samarbeid i indre Oslofjord
Managment body
Fagrådet for vann- og Avløpsteknisk samarbeid i indre Oslofjord Postboks 4735 Sofienberg 0506 Oslo NO
http://www.indre-oslofjord.no/
Content Provider
Norwegian Institute for Water Research
Research institute
Norwegian Institute for Water Research Gaustadalléen 21 0349 NO
https://www.niva.no/

Geographic Coverage

Inner Oslofjorden, Norway

Bounding Coordinates South West [59.661, 10.415], North East [59.933, 10.956]

Temporal Coverage

Start Date / End Date 1896-02-14 / 2020-12-14

Project Data

This is a PhD project where we have studied long-term time series of phytoplankton counts and diversity in the inner Oslofjorden. Such time series of species composition and abundance are essential in understanding the natural seasonal and interannual variability and possible future scenarios and thereby important for long-term management. In the project we have analysed data sampled and produced more or less regularly over the last 100 years.

Title Change in phytoplankton community structure in the inner Oslofjord during a century of sampling
Funding This work was funded by Fagrådet (for vann og avløpsteknisk samarbeid i indre Oslofjord), the Research Council of Norway (RCN, grant no 262960/O30), Niva and Norconsult AS.
Study Area Description The inner Oslofjorden is a sill fjord of 190 km2 size. The fjord is connected to the more open outer Oslofjorden and Skagerrak through the narrow sound at Drøbak, where the sill is only 19.5 m deep. North of the Drøbak sill, more sills divide the fjord into several basins, such as Vestfjorden (basin depth 162 m), Bærumsbassenget, Bekkelagsbassenget, and Bunnefjorden (basin depth 152m). The database contains 411 unique accepted taxa registrations of which 75% are identified to the genus level. These records are distributed among 18 classes. Approximately 9% of the registrations are “flagellates”, “monads” or other not identified to class. The most counted classes in the dataset are Dinophyceae (dinoflagellates) and Bacillariophyceae (diatoms) representing 37.5% and 36%, respectively, of all records.
Design Description The inner Oslofjorden Phytoplankton dataset was compiled in 2020, comprising of quantitative phytoplankton cell counts from inner Oslofjorden since 1896. Previously parts of the data has been available as handwritten or printed tables in reports and published sources17–19. All sources have are digitally available from the UiO University library, the website for “Fagrådet” (http://www.indre-oslofjord.no/) or NIVA online report database (https://www.niva.no/rapporter). Data from 1994 and onwards have been accessed digitally from the NIVA’s databases but are also available from client reports from the monitoring project for inner Oslofjorden from the online sites listed above.

The personnel involved in the project:

Author
Elisabeth Lundsør
Author
Bente Edvardsen
Author
Leif Christian Stige

Sampling Methods

The inner Oslofjorden Phytoplankton dataset was compiled in 2020, comprising of quantitative phytoplankton cell counts from inner Oslofjorden since 1896. Previously parts of the data has been available as handwritten or printed tables in reports and published sources. Data from 1994 and onwards have been accessed digitally from the NIVA’s databases but are also available from client reports from the monitoring project for inner Oslofjorden. The data already digitalized were compiled from excel files. Other data were manually entered to standard format in MS Excel files. All collected data were then integrated into one excel database.

Study Extent The database covers several sampling stations in the inner Oslofjorden, with the majority of samples (61%) from Dk1/S1 (N59.814999 E10.569384). Dk1 has been the most sampled station throughout all the years of sampling. Data are available for the years 1896-97, 1916-17, 1933-1934, 1939, 1948, 1957-58, 1962-65, 1972-1974, 1988-1990, 1994-1995 and 1998-2020. From 1998-2004 there are only samples during the summer months (May to Aug) but from 2006 to 2020, there is good seasonal coverage.
Quality Control After compilation, the data were checked for digitalization errors, which could occur during manual digitalization or just the compilation process. Duplicates and zero values were removed. Then taxonomy specialists did perform a taxonomic quality check. The nomenclature in Worms is quality assured by a wide range of taxonomic specialists. We also cross checked the last updated nomenclature in Algaebase to assign species to a valid class name. When Algaebase and Worms were not in accordance, Algaebase taxonomy was usually chosen except in the case of Bacillariophyceae.

Method step description:

  1. Data was compiled from a range of sources described in "sampling description". After compilation, the original names in our database and matched them to accepted names and Aphia ID using the taxon match tool available in the open-access reference system; World Register of Marine Species (Worms). The data was then formatted to Darwin Core.

Additional Metadata

Alternative Identifiers 777ea835-48a3-4136-bf3a-32c5b897563f
https://ipt.gbif.no/resource?r=oslofjord_phytoplankton